CRAN Package Check Results for Package gprofiler2

Last updated on 2020-10-23 03:48:43 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.0 7.54 68.03 75.57 OK
r-devel-linux-x86_64-debian-gcc 0.2.0 5.55 52.12 57.67 OK
r-devel-linux-x86_64-fedora-clang 0.2.0 99.52 OK
r-devel-linux-x86_64-fedora-gcc 0.2.0 90.06 OK
r-devel-windows-ix86+x86_64 0.2.0 15.00 117.00 132.00 OK
r-patched-linux-x86_64 0.2.0 6.50 48.52 55.02 ERROR
r-patched-solaris-x86 0.2.0 110.80 WARN
r-release-linux-x86_64 0.2.0 6.72 64.31 71.03 OK
r-release-macos-x86_64 0.2.0 WARN
r-release-windows-ix86+x86_64 0.2.0 18.00 97.00 115.00 OK
r-oldrel-macos-x86_64 0.2.0 WARN
r-oldrel-windows-ix86+x86_64 0.2.0 13.00 111.00 124.00 OK

Check Details

Version: 0.2.0
Check: examples
Result: ERROR
    Running examples in ‘gprofiler2-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: gconvert
    > ### Title: Gene ID conversion.
    > ### Aliases: gconvert
    >
    > ### ** Examples
    >
    > gconvert(c("POU5F1", "SOX2", "NANOG"), organism = "hsapiens", target="AFFY_HG_U133_PLUS_2")
    Error in gconvert(c("POU5F1", "SOX2", "NANOG"), organism = "hsapiens", :
     Bad request, response code 503
    Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.2.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘gprofiler2.Rmd’ using rmarkdown
    Quitting from lines 113-120 (gprofiler2.Rmd)
    Error: processing vignette 'gprofiler2.Rmd' failed with diagnostics:
    Bad request, response code 503
    --- failed re-building ‘gprofiler2.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘gprofiler2.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.2.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘gprofiler2.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 243-244 (gprofiler2.Rmd)
    Error: processing vignette 'gprofiler2.Rmd' failed with diagnostics:
    there is no package called 'webshot'
    --- failed re-building ‘gprofiler2.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘gprofiler2.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.2.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘gprofiler2.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 243-244 (gprofiler2.Rmd)
    Error: processing vignette 'gprofiler2.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘gprofiler2.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘gprofiler2.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64