BMhyb: Comparative Methods for Phylogenetic Networks

Analyze the phenotypic evolution of species of hybrid origin on a phylogenetic network. This can detect a burst of variation at the formation of a hybrid as well as an increase or decrease in trait value at a hybridization event. Parameters are estimated by maximum likelihood, and model averaging can be done automatically. Users need to enter a comparative data set and a phylogenetic network.

Version: 2.1.5
Depends: R (≥ 3.5.0)
Imports: corpcor, numDeriv, geiger, ape, TreeSim, mvtnorm, methods, lhs, viridis, Matrix, DEoptim, igraph, MASS, grDevices, ggplot2, cowplot, graphics, stats, metR, parallel, phytools, plyr
Suggests: testthat
Published: 2019-08-02
Author: Dwueng-Chwuan Jhwueng [aut, cre], Brian C. O'Meara [aut]
Maintainer: Dwueng-Chwuan Jhwueng <djhwueng at umail.iu.edu>
BugReports: https://github.com/bomeara/BMhyb/issues
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: http://github.com/bomeara/BMhyb
NeedsCompilation: no
Materials: NEWS
CRAN checks: BMhyb results

Downloads:

Reference manual: BMhyb.pdf
Package source: BMhyb_2.1.5.tar.gz
Windows binaries: r-devel: BMhyb_2.1.5.zip, r-release: BMhyb_2.1.5.zip, r-oldrel: BMhyb_2.1.5.zip
OS X binaries: r-release: BMhyb_2.1.5.tgz, r-oldrel: BMhyb_2.1.5.tgz
Old sources: BMhyb archive

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