LDheatmap: Graphical Display of Pairwise Linkage Disequilibria Between SNPs

Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between SNPs. Users may optionally include the physical locations or genetic map distances of each SNP on the plot. Users should note that the imported package 'snpStats' and the suggested packages 'rtracklayer', 'GenomicRanges', 'GenomInfoDb' and 'IRanges' are all BioConductor packages <https://bioconductor.org>.

Version: 0.99-7
Depends: R (≥ 2.14.0)
Imports: grid, genetics, snpStats, Rcpp
LinkingTo: Rcpp
Suggests: rtracklayer, GenomicRanges, GenomeInfoDb, IRanges, lattice, ggplot2, vcfR
Published: 2019-07-14
Author: Ji-Hyung Shin [aut], Sigal Blay [aut], Nicholas Lewin-Koh [ctb], Brad McNeney [aut, cre], Gloria Yang [ctb], Matthew Reyers [ctb], Youwei Yan [ctb], Jinko Graham [aut]
Maintainer: Brad McNeney <mcneney at sfu.ca>
License: GPL-3
URL: https://sfustatgen.github.io/LDheatmap/
NeedsCompilation: yes
Citation: LDheatmap citation info
Materials: ChangeLog
In views: Genetics
CRAN checks: LDheatmap results

Downloads:

Reference manual: LDheatmap.pdf
Vignettes: LDheatmap
LDheatmap adding tracks example
Package source: LDheatmap_0.99-7.tar.gz
Windows binaries: r-devel: LDheatmap_0.99-7.zip, r-devel-gcc8: LDheatmap_0.99-7.zip, r-release: LDheatmap_0.99-7.zip, r-oldrel: LDheatmap_0.99-7.zip
OS X binaries: r-release: LDheatmap_0.99-7.tgz, r-oldrel: LDheatmap_0.99-7.tgz
Old sources: LDheatmap archive

Reverse dependencies:

Reverse imports: synbreed

Linking:

Please use the canonical form https://CRAN.R-project.org/package=LDheatmap to link to this page.