pcmabc: Approximate Bayesian Computations for Phylogenetic Comparative Methods

Fits by ABC, the parameters of a stochastic process modelling the phylogeny and evolution of a suite of traits following the tree. The user may define an arbitrary Markov process for the trait and phylogeny. Importantly, trait-dependent speciation models are handled and fitted to data. See K. Bartoszek, P. Lio' (2019) <10.5506/APhysPolBSupp.12.25>. The suggested geiger package can be obtained from CRAN's archive <https://cran.r-project.org/src/contrib/Archive/geiger/>, suggested to take latest version. Otherwise its required code is present in the pcmabc package. The suggested distory package can be obtained from CRAN's archive <https://cran.r-project.org/src/contrib/Archive/distory/>, suggested to take latest version. Both distory and geiger are orphaned at the moment.

Version: 1.1
Depends: R (≥ 2.9.1)
Imports: ape (≥ 3.0.6), graphics, methods, mvSLOUCH, phangorn, stats, TreeSim, utils, yuima
Suggests: geiger, distory
Published: 2020-01-22
Author: Krzysztof Bartoszek, Pietro Lio'
Maintainer: Krzysztof Bartoszek <krzbar at protonmail.ch>
License: GPL-2 | GPL-3 | file LICENCE [expanded from: GPL (≥ 2) | file LICENCE]
NeedsCompilation: no
Citation: pcmabc citation info
CRAN checks: pcmabc results

Downloads:

Reference manual: pcmabc.pdf
Package source: pcmabc_1.1.tar.gz
Windows binaries: r-devel: pcmabc_1.1.zip, r-devel-gcc8: pcmabc_1.0.4.zip, r-release: pcmabc_1.1.zip, r-oldrel: pcmabc_1.1.zip
OS X binaries: r-release: pcmabc_1.1.tgz, r-oldrel: pcmabc_1.1.tgz
Old sources: pcmabc archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=pcmabc to link to this page.